PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g10030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 200aa    MW: 22305.1 Da    PI: 9.7472
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g10030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.82.7e-4021125289
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aikelt+++ s+ s+  +++s+ + ++    +      
  Vradi04g10030.1  21 TAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSADSFEfSSSSDDVDGGV---Prdddfn 111
                      78**************************************************************66655333222222222221...1222444 PP

              TCP  89 .............k 89 
                                   +
  Vradi04g10030.1 112 vieesivikrklkH 125
                      44455554444431 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.6E-3821120IPR005333Transcription factor, TCP
PROSITE profilePS5136936.4012381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MLNQDLGGAL YGITKKPAKK TAKKDRHSKI HTSQGLRDRR VRLSIEIARK FFDLQDMLGF  60
DKASNTLDWL FTKSKKAIKE LTRSKHSADS FEFSSSSDDV DGGVPRDDDF NVIEESIVIK  120
RKLKHSLMSS IHHQNAVIPK EATVNNSDYH SFPNLSPNWE ANNAANGRSN FCAIASMNLS  180
AGLQIFGKSW EECTNPHPT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-159AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497254.15e-69PREDICTED: transcription factor DICHOTOMA-like
TrEMBLA0A0L9U1Z81e-67A0A0L9U1Z8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RRG31e-67A0A0S3RRG3_PHAAN; Uncharacterized protein
STRINGGLYMA08G28691.11e-60(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.28e-28TCP family protein